The top Indian official had resigned earlier this month, citing personal reasons.
The teams will now head to Dharamsala for the final match from Saturday.
Australia are still 129 runs behind and under considerable pressure to save the match.
India still trail the visitors by 91 runs in their first innings.
Murali Vijay on 42 and Cheteshwar Pujara on 10 were batting at the close of play.
The Indian captain hurt his right shoulder while fielding and went off in the afternoon session.
Home captain Virat Kohli injured his shoulder while diving to save a boundary.
The Indian cited personal reasons for resigning after just eight months of his two-year term.
Al Hamra beat Gladiators by four wickets to clinch the Ibn Ajayan Twenty20 Cricket Tournament at the Asian Town Stadium.
Sharjeel Khan, Khalid Latif and Nasir Jamshed were also provisionally suspended.
The 23-year-old has not played a Test since his stunning seven-wicket debut against South Africa in 2011.
Joins Mitchell Marsh on the sidelines
The tourists cruised to a series sweep with a massive 186-run victory.